PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0808s0010.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 500aa    MW: 55135.4 Da    PI: 4.4169
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0808s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.8e-36381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d+++++++sws+ +nsfvv+++ ef +++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk
  Kaladp0808s0010.2.p  38 FLCKTYDMVDDPSTDTVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGKK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr+k +
  Kaladp0808s0010.2.p 119 HLLNTIKRRKAS 130
                          *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3533127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6134127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSNGADGGIS GTCRAESTQS VPAPVPVPMP NPNAPPPFLC KTYDMVDDPS TDTVVSWSSG  60
NNSFVVWNPP EFGRDLLPKY FKHSNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGKKHL  120
LNTIKRRKAS QAPTQSQLEQ SQVQSPAATA CVEVGKFGLE EEVEILKRDK NVLMQELVKL  180
RQQQQTTDKQ LQVTMDRLQG VEERQQQLMS FLAKAVQSPG FFSQFVLQQA QNNRLISEAN  240
KKRRLKQDDV TMDYPSSNPG SQIVKYQPFL NEVSTAFLQQ MMEVDNSSQL EFRNNDPDNL  300
FLDDASSSSN GGSSMDGVSK PPIPEVLASS AQFRSPPPSM IPPCGSAGDL VDVQHSSLGA  360
SSEVGRMIHH PPVSSDKQDS SPPSDLQSGP ALPMFTDMVP ESVAENLNDD SIQFDATTFG  420
LDTDLPFGIE SISPGHVPND MSAYEDVWKM LSEEIDSAQL DHLANESEML LVEDELDSSQ  480
NIDHLTDQME LLSSGAEKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252913011123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246NKKRRLKQ
2240245KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236740.11e-155heat shock factor protein hsf8-related
SwissprotQ84T611e-124HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLQ564C81e-155Q564C8_SOYBN; Heat shock factor protein hsf8-related
STRINGGLYMA16G13400.11e-154(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-104heat shock transcription factor A1D